Cell Culture Under Flow

Culture Your Cells Under Physiological Conditions

Traditional static cell culture techniques fail to mimic the dynamic nature of in vivo environments, limiting the physiological relevance of the experimental results. ibidi provides advanced solutions for conducting and analyzing cell culture under flow assays under in vivo-like conditions. By integrating various ibidi products, researchers can effortlessly manage complex designs, enhancing the robustness and efficiency of their scientific investigations. With the ibidi Pump System, the µ-Slides, and the ibidi Stage Top Incubators, you can elevate your research to achieve more precise and reliable results.

This application chapter provides a detailed overview of the features and applications of the ibidi Pump System in combination with specialized channel slides. These slides are designed to stimulate the mechanical force generated by fluid flow, such as wall shear stress in blood and lymphatic vessels. They also support the long-term cultivation of both 2D and 3D cells by enhancing cellular viability and perforation through optimal nutrient supply and waste removal through dynamic cell perfusion.

Experimental Workflow

Systems and Applications

Cell culture under flow experiments demand absolutely precise and reliable setups. The ibidi products, including the ibidi Pump System, the µ-Slides, and the ibidi Stage Top Incubators, are designed for performing and analyzing cell culture under flow assays under physiologic conditions. Thanks to their flexibility and modularity, these systems can be easily tailored to meet your experimental requirements and can be used for creating a defined flow profile and wall shear stress as well as perfusion through 3D culture chips and platforms.

Simulation of Wall Shear Stress

Perfusion systems can simulate wall shear stress, which is a mechanical force that is created by fluid flow in biofluidic systems, including blood and lymphatic vessels and nephrons. These systems support the physiological long-term cultivation of vascular endothelial and epithelial cells for the analysis of relevant readouts, including cell morphology, behavior, and physiology.


Perfused Cell Cultures

Perfusion of cell cultures using 3D culture chips and platforms enables physiological long-term 2D and 3D cell culture, and can be used for organoids, spheroids, and organs-on-a-chip. These systems facilitate continuous medium exchange, ensuring a constant supply of nutrients for optimal cell viability and health.


ibidi Blog Articles

Do you want to know "3 Reasons Why You Should Cultivate Endothelial Cells Under Flow"?

Discover how cell culture under flow is used to simulate endothelial dysfunction in our blog article "Shear Genius: Microfluidics in Atherosclerosis Research".

Scientific Posters

Cell Culture Under Flow: Enhancing Cellular Physiology and Function Through Dynamic Microenvironments (PDF)

Cell Culture Under Flow: Enhancing Cellular Physiology and Function Through Dynamic Microenvironments (PDF)

Presented at the International Cell Culture Under Flow Meeting 2024, Chicago, USA.

Perfused 3D Cell Culture Platform for Long-term Monitoring of Glucose and Lactate Metabolism in Tumor Spheroids (PDF)

Perfused 3D Cell Culture Platform for Long-term Monitoring of Glucose and Lactate Metabolism in Tumor Spheroids (PDF)

Presented at the SelectBio Conference Organoids and Spheroids Europe 2024, Rotterdam, The Netherlands.

Changes in cell-cell contacts of endothelial cells (HUVEC) under long term shear stress conditions (PDF)

Changes in cell-cell contacts of endothelial cells (HUVEC) under long term shear stress conditions (PDF)

Presented at the North American Vascular Biology Organization (NAVBO) Conference 2014, Monterey, California, USA.

Defining the Critical Shear Stress Range in Long Term HUVEC Cell Culture (PDF)

Defining the Critical Shear Stress Range in Long Term HUVEC Cell Culture (PDF)

Presented at the 17th Barrier and Transporter Meeting 2015, Bad Herrenalb, Germany.

Selected Publications

The effect of different blood flow patterns on the endothelial lipidome was investigated using the ibidi Pump System and µ-Slides Luer.
Hong SG, Kennelly JP, Williams KJ, Bensinger SJ, Mack JJ. Flow-mediated modulation of the endothelial cell lipidome. Front Physiol. 2024;15:1431847. doi:10.3389/fphys.2024.1431847.
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Endothelial cells were cultured under high laminar shear stress using the ibidi Pump System, µ-Slide 0.4 Luer, µ-Slide y-shaped, and µ-Slides With Test µ-Patterns RGD,  to study how it influences inflammation.
Hong SG, Ashby JW, Kennelly JP, et al. Mechanosensitive membrane domains regulate calcium entry in arterial endothelial cells to protect against inflammation. J Clin Invest. 2024;134(13):e175057. doi:10.1172/JCI175057.
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The ibidi Pump System was used to develop an in vitro bypass flow model to simulate disturbed flow and other hemodynamics patterns.
Xiao Z, Postma RJ, van Zonneveld AJ, et al. A bypass flow model to study endothelial cell mechanotransduction across diverse flow environments. Mater Today Bio. 2024;27:101121.  doi:10.1016/j.mtbio.2024.101121.
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Shear stress-modulated chromatin accessibility: This protocol demonstrates culture and harvesting of endothelial cells for ATAC-seq, highlighting growth factor stimulation and different shear stress rates.
Jatzlau J, Mendez PL, Altay A, et al. Fluid shear stress-modulated chromatin accessibility reveals the mechano-dependency of endothelial SMAD1/5-mediated gene transcription. iScience. 2023;26(9):107405. doi:10.1016/j.isci.2023.107405.
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The ibidi Pump System and µ-Slides Luer were used to study how different shear stress patterns influence Mitochondrial Ca2+ Uniporter (MCU) activity in vascular endothelial cells.
Patel A, Pietromicca JG, Venkatesan M, et al. Modulation of the mitochondrial Ca2+ uniporter complex subunit expression by different shear stress patterns in vascular endothelial cells. Physiol Rep. 2023;11(3):e15588. doi:10.14814/phy2.15588.
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Dynamic endothelial cell cultivation on scaffolds using the ibidi Pump System and µ-Slide I Luer 3D.
Loewner S, Heene S, Cholewa F, Heymann H, Blume H, Blume C. Successful endothelial monolayer formation on melt electrowritten scaffolds under dynamic conditions to mimic tunica intima. Int J Bioprint. 2024;10(1):1111. doi: 10.36922/ijb.1111.
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The ibidi Pump System and µ-Slides I 0.8 Luer were used do simulate laminar and disturbed flow in lymphatic endothelial cells to analyze the function of FOXC2 in lymphatic vasculature.
Sabine A, Bovay E, Demir CS, et al. FOXC2 and fluid shear stress stabilize postnatal lymphatic vasculature. J Clin Invest. 2015;125(10):3861-3877. doi:10.1172/JCI80454.
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